Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AC010491.1-201ENST00000563101 2797 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CICP6-201ENST00000457191 2729 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 HLA-A-201ENST00000376802 1334 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AL009183.1-201ENST00000603760 355 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AC023141.13-201ENST00000604991 943 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AC007064.4-201ENST00000637740 555 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 AL162727.3-201ENST00000635661 2787 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 CDC14C-201ENST00000428251 1719 ntBASIC14.78□□□□□ -0.04
HIF3AQ9Y2N7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 AC092919.2-201ENST00000623631 1645 ntBASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 LINC02447-202ENST00000501888 2146 ntBASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HIF3AQ9Y2N7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 TPM4P1-201ENST00000436100 807 ntBASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HIF3AQ9Y2N7 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HIF3AQ9Y2N7 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms