Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 SLC25A6P2-201ENST00000497974 877 ntBASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC39Q9UFE4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AP002414.3-201ENST00000589352 1468 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 HLA-J-202ENST00000469281 1241 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 IGHV3-65-201ENST00000523210 341 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AL160237.2-201ENST00000556165 472 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AC148477.8-201ENST00000624298 468 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 AL139011.1-202ENST00000642063 584 ntBASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC39Q9UFE4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AC068587.6-202ENST00000641839 5619 ntBASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AP002469.2-201ENST00000531724 424 ntBASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AC012640.2-201ENST00000561606 901 ntBASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 MPDU1-223ENST00000582151 728 ntBASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AL773604.1-201ENST00000617417 272 ntBASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 AC129492.6-201ENST00000611383 1305 ntBASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms