Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AC008741.2-201ENST00000612792 3115 ntBASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.95
SMC4Q9NTJ3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SMC4Q9NTJ3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AL592309.1-201ENST00000443127 649 ntBASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 IGHV3-62-201ENST00000520057 340 ntBASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AP000842.3-202ENST00000569238 1080 ntBASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AL513210.1-201ENST00000629608 234 ntBASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC4Q9NTJ3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 KRT18P13-201ENST00000400056 1290 ntBASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC4Q9NTJ3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 AC024909.3-201ENST00000611513 2257 ntBASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.93■□□□□ 0.94
SMC4Q9NTJ3 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms