Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AL022342.1-201ENST00000400363 863 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AC105233.2-201ENST00000523697 349 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AF228730.5-201ENST00000530288 346 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 LINC01225-203ENST00000563550 1244 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AC040169.1-201ENST00000565382 521 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AC027307.2-201ENST00000591252 911 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SPTSSB-204ENST00000617024 1292 ntBASIC17.47■□□□□ 0.39
SIX2Q9NPC8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 PRAL-201ENST00000624952 3286 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC098859.1-201ENST00000502915 1238 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 KRT8P48-201ENST00000515599 1220 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 KRT18P58-201ENST00000527480 1120 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC008267.7-201ENST00000624570 1194 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC092384.3-202ENST00000564646 2873 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SIX2Q9NPC8 AC134407.2-201ENST00000625089 1978 ntBASIC17.46■□□□□ 0.39
SIX2Q9NPC8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX2Q9NPC8 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SIX2Q9NPC8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.45■□□□□ 0.38
SIX2Q9NPC8 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX2Q9NPC8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SIX2Q9NPC8 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms