Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 NOC2LP2-201ENST00000407594 1944 ntBASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AC134043.2-201ENST00000624206 2238 ntBASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AC068880.1-201ENST00000507289 2297 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AC007969.1-201ENST00000433675 447 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AC105129.2-201ENST00000559536 390 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AP001063.1-201ENST00000568332 529 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 KRT8P37-201ENST00000451609 1420 ntBASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.27■□□□□ 0.68
ZNF541Q9H0D2 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ZNF541Q9H0D2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
ZNF541Q9H0D2 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ZNF541Q9H0D2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ZNF541Q9H0D2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.27■□□□□ 0.67
ZNF541Q9H0D2 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RPL13AP25-201ENST00000484130 612 ntBASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 MIR6727-201ENST00000620702 65 ntBASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 AL008638.5-201ENST00000623814 1298 ntBASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 PCGF3-213ENST00000620529 1899 ntBASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms