Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.68■□□□□ 0.58
USP28Q96RU2 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.68■□□□□ 0.58
USP28Q96RU2 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.68■□□□□ 0.58
USP28Q96RU2 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.68■□□□□ 0.58
USP28Q96RU2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 AC144831.1-201ENST00000573312 2656 ntBASIC18.68■□□□□ 0.58
USP28Q96RU2 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 AC104640.1-201ENST00000562617 2109 ntBASIC18.68■□□□□ 0.58
USP28Q96RU2 BCAR1-209ENST00000546196 1340 ntBASIC18.68■□□□□ 0.58
USP28Q96RU2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
USP28Q96RU2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
USP28Q96RU2 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
USP28Q96RU2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.67■□□□□ 0.58
USP28Q96RU2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.67■□□□□ 0.58
USP28Q96RU2 KRT18P34-201ENST00000488218 1270 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC145285.3-201ENST00000564603 959 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC064836.3-201ENST00000607928 673 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC007064.4-201ENST00000637740 555 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC126177.1-201ENST00000547829 2218 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.67■□□□□ 0.58
USP28Q96RU2 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 AC073439.1-201ENST00000624121 1774 ntBASIC18.67■□□□□ 0.58
USP28Q96RU2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.67■□□□□ 0.58
USP28Q96RU2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP28Q96RU2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
USP28Q96RU2 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.66■□□□□ 0.58
USP28Q96RU2 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.66■□□□□ 0.58
USP28Q96RU2 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.66■□□□□ 0.58
USP28Q96RU2 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.66■□□□□ 0.58
USP28Q96RU2 KRT19P2-202ENST00000557173 1012 ntBASIC18.66■□□□□ 0.58
USP28Q96RU2 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
USP28Q96RU2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
USP28Q96RU2 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
USP28Q96RU2 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
USP28Q96RU2 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 AC073347.1-201ENST00000421633 2643 ntBASIC18.66■□□□□ 0.58
USP28Q96RU2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP28Q96RU2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms