Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC006449.6-201ENST00000612330 2296 ntBASIC21.3■■□□□ 1
USP54Q70EL1 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.3■■□□□ 1
USP54Q70EL1 AC018470.1-201ENST00000624790 3129 ntBASIC21.3■■□□□ 1
USP54Q70EL1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.3■■□□□ 1
USP54Q70EL1 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
USP54Q70EL1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC21.3■■□□□ 1
USP54Q70EL1 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.3■■□□□ 1
USP54Q70EL1 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC21.3■■□□□ 1
USP54Q70EL1 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC21.3■■□□□ 1
USP54Q70EL1 METTL26-214ENST00000614890 801 ntTSL 3 BASIC21.3■■□□□ 1
USP54Q70EL1 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC21.3■■□□□ 1
USP54Q70EL1 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC21.3■■□□□ 1
USP54Q70EL1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
USP54Q70EL1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP54Q70EL1 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP54Q70EL1 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP54Q70EL1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 TPO-206ENST00000382269 1155 ntTSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
USP54Q70EL1 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC21.29■■□□□ 1
USP54Q70EL1 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC21.29■■□□□ 1
USP54Q70EL1 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC21.29■■□□□ 1
USP54Q70EL1 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 ENPP7P5-201ENST00000541031 1031 ntBASIC21.29■■□□□ 1
USP54Q70EL1 AL583810.1-201ENST00000553344 1045 ntBASIC21.29■■□□□ 1
USP54Q70EL1 DERL2-202ENST00000570848 657 ntTSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 DRD5P1-201ENST00000456605 1438 ntBASIC21.29■■□□□ 1
USP54Q70EL1 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP54Q70EL1 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
USP54Q70EL1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 AC005052.1-201ENST00000625181 2492 ntBASIC21.28■■□□□ 1
USP54Q70EL1 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 KLF2P4-201ENST00000451959 1225 ntBASIC21.28■■□□□ 1
USP54Q70EL1 GAPDHP40-201ENST00000505218 1006 ntBASIC21.28■■□□□ 1
USP54Q70EL1 RIT1-205ENST00000539040 919 ntTSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC21.28■■□□□ 1
USP54Q70EL1 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 UBL5-208ENST00000593087 320 ntTSL 3 BASIC21.28■■□□□ 1
USP54Q70EL1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.28■■□□□ 1
USP54Q70EL1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
USP54Q70EL1 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 GZMB-202ENST00000382540 816 ntTSL 5 BASIC21.28■■□□□ 1
USP54Q70EL1 BAATP1-201ENST00000412284 1225 ntBASIC21.28■■□□□ 1
USP54Q70EL1 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC21.28■■□□□ 1
USP54Q70EL1 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC21.28■■□□□ 1
USP54Q70EL1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP54Q70EL1 AC025279.2-201ENST00000569730 653 ntBASIC21.28■■□□□ 1
USP54Q70EL1 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC21.28■■□□□ 1
USP54Q70EL1 RHOXF1P1-202ENST00000635473 501 ntBASIC21.28■■□□□ 1
USP54Q70EL1 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
USP54Q70EL1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC21.27■■□□□ 1
USP54Q70EL1 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 ALOX12P2-203ENST00000570921 1945 ntBASIC21.27■■□□□ 1
USP54Q70EL1 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.27■■□□□ 1
USP54Q70EL1 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP54Q70EL1 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC21.27■■□□□ 1
USP54Q70EL1 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC21.27■■□□□ 1
USP54Q70EL1 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC21.27■■□□□ 1
USP54Q70EL1 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.27■□□□□ 0.99
USP54Q70EL1 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
USP54Q70EL1 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.27■□□□□ 0.99
USP54Q70EL1 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC21.27■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms