Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 FLJ38576-201ENST00000623820 2459 ntBASIC16.6■□□□□ 0.25
USP39Q53GS9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.6■□□□□ 0.25
USP39Q53GS9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
USP39Q53GS9 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 ATP5G2P4-201ENST00000442175 420 ntBASIC16.6■□□□□ 0.25
USP39Q53GS9 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.6■□□□□ 0.25
USP39Q53GS9 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 MIR4492-201ENST00000581627 80 ntBASIC16.6■□□□□ 0.25
USP39Q53GS9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.6■□□□□ 0.25
USP39Q53GS9 SPTSSB-204ENST00000617024 1292 ntBASIC16.6■□□□□ 0.25
USP39Q53GS9 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
USP39Q53GS9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
USP39Q53GS9 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.6■□□□□ 0.25
USP39Q53GS9 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.6■□□□□ 0.25
USP39Q53GS9 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.59■□□□□ 0.25
USP39Q53GS9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.59■□□□□ 0.25
USP39Q53GS9 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.59■□□□□ 0.25
USP39Q53GS9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.59■□□□□ 0.25
USP39Q53GS9 TEX28P1-201ENST00000613479 1221 ntBASIC16.59■□□□□ 0.25
USP39Q53GS9 TEX28P2-201ENST00000617764 1221 ntBASIC16.59■□□□□ 0.25
USP39Q53GS9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
USP39Q53GS9 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.59■□□□□ 0.25
USP39Q53GS9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.59■□□□□ 0.25
USP39Q53GS9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.59■□□□□ 0.25
USP39Q53GS9 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP39Q53GS9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP39Q53GS9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
USP39Q53GS9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
USP39Q53GS9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.58■□□□□ 0.25
USP39Q53GS9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
USP39Q53GS9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
USP39Q53GS9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
USP39Q53GS9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP39Q53GS9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP39Q53GS9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
USP39Q53GS9 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
USP39Q53GS9 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP39Q53GS9 AC098614.1-201ENST00000368528 745 ntBASIC16.58■□□□□ 0.24
USP39Q53GS9 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.58■□□□□ 0.24
USP39Q53GS9 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.58■□□□□ 0.24
USP39Q53GS9 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.58■□□□□ 0.24
USP39Q53GS9 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.58■□□□□ 0.24
USP39Q53GS9 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.58■□□□□ 0.24
USP39Q53GS9 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.58■□□□□ 0.24
USP39Q53GS9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
USP39Q53GS9 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.58■□□□□ 0.24
USP39Q53GS9 AC124947.2-201ENST00000547118 1133 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms