Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SSR4P1-203ENST00000599569 2260 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
FOXA3P55318 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.34□□□□□ -0.43
FOXA3P55318 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
FOXA3P55318 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC12.34□□□□□ -0.43
FOXA3P55318 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.34□□□□□ -0.43
FOXA3P55318 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.34□□□□□ -0.43
FOXA3P55318 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
FOXA3P55318 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.34□□□□□ -0.43
FOXA3P55318 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 KRT8P39-201ENST00000396270 1433 ntBASIC12.34□□□□□ -0.43
FOXA3P55318 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
FOXA3P55318 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 TMBIM7P-203ENST00000641617 1718 ntBASIC12.34□□□□□ -0.43
FOXA3P55318 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
FOXA3P55318 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA3P55318 REXO1L8P-201ENST00000604378 1897 ntBASIC12.34□□□□□ -0.43
FOXA3P55318 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA3P55318 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
FOXA3P55318 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
FOXA3P55318 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
FOXA3P55318 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
FOXA3P55318 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.33□□□□□ -0.44
FOXA3P55318 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.33□□□□□ -0.44
FOXA3P55318 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 CD320-202ENST00000537716 1119 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC12.33□□□□□ -0.44
FOXA3P55318 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.33□□□□□ -0.44
FOXA3P55318 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 AL359258.3-201ENST00000622910 2331 ntBASIC12.33□□□□□ -0.44
FOXA3P55318 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms