Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP001282.1-201ENST00000531301 1499 ntBASIC21.11■□□□□ 0.97
COL18A1P39060 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC21.11■□□□□ 0.97
COL18A1P39060 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.11■□□□□ 0.97
COL18A1P39060 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 AL133373.2-201ENST00000623187 2828 ntBASIC21.11■□□□□ 0.97
COL18A1P39060 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 RHOQP1-201ENST00000555758 579 ntBASIC21.1■□□□□ 0.97
COL18A1P39060 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 CMC2-214ENST00000565925 640 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 ARL16-210ENST00000574938 751 ntTSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 AC008687.7-202ENST00000637404 953 ntBASIC21.1■□□□□ 0.97
COL18A1P39060 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 MIR326-201ENST00000362220 95 ntBASIC21.1■□□□□ 0.97
COL18A1P39060 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
COL18A1P39060 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
COL18A1P39060 RPL8-205ENST00000527914 551 ntTSL 3 BASIC21.1■□□□□ 0.97
COL18A1P39060 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC21.1■□□□□ 0.97
COL18A1P39060 AL450472.2-201ENST00000603663 1156 ntBASIC21.1■□□□□ 0.97
COL18A1P39060 PRKN-211ENST00000615065 261 ntTSL 5 BASIC21.1■□□□□ 0.97
COL18A1P39060 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
COL18A1P39060 AL607033.1-201ENST00000623900 1599 ntBASIC21.1■□□□□ 0.97
COL18A1P39060 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL18A1P39060 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.1■□□□□ 0.97
COL18A1P39060 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 AC134407.2-201ENST00000625089 1978 ntBASIC21.09■□□□□ 0.97
COL18A1P39060 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL18A1P39060 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC21.09■□□□□ 0.97
COL18A1P39060 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC21.09■□□□□ 0.97
COL18A1P39060 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 HARS-202ENST00000415192 1401 ntTSL 2 BASIC21.09■□□□□ 0.97
COL18A1P39060 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC21.09■□□□□ 0.97
COL18A1P39060 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL18A1P39060 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL18A1P39060 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC21.08■□□□□ 0.97
COL18A1P39060 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC21.08■□□□□ 0.97
COL18A1P39060 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC21.08■□□□□ 0.97
COL18A1P39060 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC21.08■□□□□ 0.97
COL18A1P39060 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.08■□□□□ 0.97
COL18A1P39060 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC21.08■□□□□ 0.97
COL18A1P39060 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL18A1P39060 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
COL18A1P39060 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC21.08■□□□□ 0.96
COL18A1P39060 AC007613.1-201ENST00000572811 2597 ntBASIC21.08■□□□□ 0.96
COL18A1P39060 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
COL18A1P39060 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.08■□□□□ 0.96
COL18A1P39060 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.08■□□□□ 0.96
COL18A1P39060 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms