Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RAB43P1-201ENST00000561790 589 ntBASIC16.89■□□□□ 0.29
HOXA9P31269 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXA9P31269 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.89■□□□□ 0.29
HOXA9P31269 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXA9P31269 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXA9P31269 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 AC084018.2-201ENST00000613093 2607 ntBASIC16.89■□□□□ 0.29
HOXA9P31269 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXA9P31269 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXA9P31269 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 HTR7P1-202ENST00000624664 4411 ntBASIC16.88■□□□□ 0.29
HOXA9P31269 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 AC098850.1-201ENST00000419919 790 ntBASIC16.88■□□□□ 0.29
HOXA9P31269 AC112492.5-201ENST00000421897 457 ntBASIC16.88■□□□□ 0.29
HOXA9P31269 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 AC007389.4-201ENST00000454674 793 ntBASIC16.88■□□□□ 0.29
HOXA9P31269 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.88■□□□□ 0.29
HOXA9P31269 POU5F1P6-201ENST00000466990 990 ntBASIC16.88■□□□□ 0.29
HOXA9P31269 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.88■□□□□ 0.29
HOXA9P31269 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXA9P31269 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.88■□□□□ 0.29
HOXA9P31269 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.88■□□□□ 0.29
HOXA9P31269 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXA9P31269 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
HOXA9P31269 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 AC004987.2-201ENST00000395959 1148 ntBASIC16.87■□□□□ 0.29
HOXA9P31269 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXA9P31269 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.87■□□□□ 0.29
HOXA9P31269 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXA9P31269 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXA9P31269 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXA9P31269 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
HOXA9P31269 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXA9P31269 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXA9P31269 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HOXA9P31269 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXA9P31269 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HOXA9P31269 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
HOXA9P31269 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HOXA9P31269 MIR1909-201ENST00000411312 80 ntBASIC16.86■□□□□ 0.29
HOXA9P31269 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HOXA9P31269 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXA9P31269 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXA9P31269 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HOXA9P31269 AC104596.2-201ENST00000512793 793 ntBASIC16.86■□□□□ 0.29
HOXA9P31269 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXA9P31269 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXA9P31269 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms