Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.65■□□□□ 0.58
SMARCA1P28370 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.65■□□□□ 0.58
SMARCA1P28370 SPDYE12P-201ENST00000618416 771 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 AL590560.3-201ENST00000623350 461 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.65■□□□□ 0.58
SMARCA1P28370 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SMARCA1P28370 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.65■□□□□ 0.58
SMARCA1P28370 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 AC092364.2-201ENST00000596710 2692 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMARCA1P28370 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.64■□□□□ 0.58
SMARCA1P28370 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.64■□□□□ 0.58
SMARCA1P28370 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.64■□□□□ 0.58
SMARCA1P28370 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 AC027369.6-201ENST00000525520 931 ntBASIC18.64■□□□□ 0.57
SMARCA1P28370 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.64■□□□□ 0.57
SMARCA1P28370 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.64■□□□□ 0.57
SMARCA1P28370 AC005498.2-205ENST00000593218 784 ntBASIC18.64■□□□□ 0.57
SMARCA1P28370 TEX28P1-201ENST00000613479 1221 ntBASIC18.64■□□□□ 0.57
SMARCA1P28370 TEX28P2-201ENST00000617764 1221 ntBASIC18.64■□□□□ 0.57
SMARCA1P28370 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SMARCA1P28370 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCA1P28370 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SMARCA1P28370 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCA1P28370 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SMARCA1P28370 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCA1P28370 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
SMARCA1P28370 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SMARCA1P28370 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SMARCA1P28370 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 AC241585.1-201ENST00000433527 519 ntBASIC18.63■□□□□ 0.57
SMARCA1P28370 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCA1P28370 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.63■□□□□ 0.57
SMARCA1P28370 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SMARCA1P28370 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.63■□□□□ 0.57
SMARCA1P28370 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 AC087499.5-201ENST00000452760 1342 ntBASIC18.63■□□□□ 0.57
SMARCA1P28370 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SMARCA1P28370 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SMARCA1P28370 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SMARCA1P28370 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCA1P28370 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SMARCA1P28370 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCA1P28370 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.62■□□□□ 0.57
SMARCA1P28370 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 MIR770-201ENST00000390219 98 ntBASIC18.62■□□□□ 0.57
SMARCA1P28370 TSSK5P-201ENST00000423978 907 ntBASIC18.62■□□□□ 0.57
SMARCA1P28370 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.62■□□□□ 0.57
SMARCA1P28370 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.62■□□□□ 0.57
SMARCA1P28370 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.62■□□□□ 0.57
SMARCA1P28370 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCA1P28370 ZNF890P-202ENST00000530367 1156 ntBASIC18.62■□□□□ 0.57
SMARCA1P28370 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms