Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LDLRP01130 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 AC002310.6-201ENST00000624451 1377 ntBASIC15.88■□□□□ 0.13
LDLRP01130 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.88■□□□□ 0.13
LDLRP01130 KRT18P2-201ENST00000447938 1258 ntBASIC15.88■□□□□ 0.13
LDLRP01130 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.88■□□□□ 0.13
LDLRP01130 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 AC005593.1-201ENST00000624894 515 ntBASIC15.88■□□□□ 0.13
LDLRP01130 AC067930.6-201ENST00000623257 4947 ntBASIC15.88■□□□□ 0.13
LDLRP01130 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LDLRP01130 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDLRP01130 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDLRP01130 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.88■□□□□ 0.13
LDLRP01130 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.87■□□□□ 0.13
LDLRP01130 AL049757.1-201ENST00000616842 1596 ntBASIC15.87■□□□□ 0.13
LDLRP01130 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
LDLRP01130 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.87■□□□□ 0.13
LDLRP01130 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.87■□□□□ 0.13
LDLRP01130 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 AC108751.1-201ENST00000490852 363 ntBASIC15.87■□□□□ 0.13
LDLRP01130 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.87■□□□□ 0.13
LDLRP01130 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
LDLRP01130 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.87■□□□□ 0.13
LDLRP01130 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.87■□□□□ 0.13
LDLRP01130 AP000867.4-201ENST00000641616 219 ntBASIC15.87■□□□□ 0.13
LDLRP01130 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms