Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VPS4BO75351 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VPS4BO75351 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS4BO75351 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VPS4BO75351 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
VPS4BO75351 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS4BO75351 AC087163.2-201ENST00000457299 853 ntBASIC16.09■□□□□ 0.17
VPS4BO75351 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.09■□□□□ 0.17
VPS4BO75351 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VPS4BO75351 AP001350.2-201ENST00000625104 1094 ntBASIC16.09■□□□□ 0.17
VPS4BO75351 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS4BO75351 AC063926.3-201ENST00000624734 5658 ntBASIC16.08■□□□□ 0.17
VPS4BO75351 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.08■□□□□ 0.17
VPS4BO75351 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
VPS4BO75351 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS4BO75351 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
VPS4BO75351 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.08■□□□□ 0.17
VPS4BO75351 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS4BO75351 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS4BO75351 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.08■□□□□ 0.16
VPS4BO75351 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS4BO75351 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS4BO75351 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS4BO75351 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.08■□□□□ 0.16
VPS4BO75351 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
VPS4BO75351 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS4BO75351 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS4BO75351 C20orf181-201ENST00000623918 480 ntBASIC16.08■□□□□ 0.16
VPS4BO75351 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS4BO75351 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS4BO75351 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS4BO75351 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS4BO75351 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS4BO75351 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
VPS4BO75351 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
VPS4BO75351 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
VPS4BO75351 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 CRYGEP-201ENST00000412192 528 ntBASIC16.07■□□□□ 0.16
VPS4BO75351 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS4BO75351 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS4BO75351 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS4BO75351 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 CYP2A7P1-201ENST00000595391 815 ntBASIC16.07■□□□□ 0.16
VPS4BO75351 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS4BO75351 AC020765.3-201ENST00000613051 740 ntBASIC16.07■□□□□ 0.16
VPS4BO75351 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
VPS4BO75351 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS4BO75351 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
VPS4BO75351 AL353732.1-201ENST00000569618 1459 ntBASIC16.07■□□□□ 0.16
VPS4BO75351 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms