Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB2O43679 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB2O43679 AC022188.1-201ENST00000620960 1664 ntBASIC16.33■□□□□ 0.2
LDB2O43679 CDC14C-201ENST00000428251 1719 ntBASIC16.33■□□□□ 0.2
LDB2O43679 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB2O43679 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LDB2O43679 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LDB2O43679 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LDB2O43679 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB2O43679 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB2O43679 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 AC008741.2-201ENST00000612792 3115 ntBASIC16.32■□□□□ 0.2
LDB2O43679 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 AC069224.1-201ENST00000566372 1715 ntBASIC16.32■□□□□ 0.2
LDB2O43679 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.32■□□□□ 0.2
LDB2O43679 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 MIR4321-201ENST00000592276 80 ntBASIC16.32■□□□□ 0.2
LDB2O43679 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB2O43679 SPTSSB-204ENST00000617024 1292 ntBASIC16.32■□□□□ 0.2
LDB2O43679 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB2O43679 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB2O43679 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LDB2O43679 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB2O43679 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LDB2O43679 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB2O43679 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 LINC02447-202ENST00000501888 2146 ntBASIC16.31■□□□□ 0.2
LDB2O43679 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 AC112504.1-201ENST00000623415 1841 ntBASIC16.31■□□□□ 0.2
LDB2O43679 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB2O43679 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB2O43679 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 AC008677.1-201ENST00000519230 1561 ntBASIC16.31■□□□□ 0.2
LDB2O43679 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB2O43679 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB2O43679 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 UPF3AP3-201ENST00000420996 769 ntBASIC16.31■□□□□ 0.2
LDB2O43679 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB2O43679 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 CEND1P1-201ENST00000451006 455 ntBASIC16.31■□□□□ 0.2
LDB2O43679 TIMM8BP1-201ENST00000452384 211 ntBASIC16.31■□□□□ 0.2
LDB2O43679 AP000842.3-202ENST00000569238 1080 ntBASIC16.31■□□□□ 0.2
LDB2O43679 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LDB2O43679 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB2O43679 AC007950.2-201ENST00000615045 2347 ntBASIC16.31■□□□□ 0.2
LDB2O43679 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 AC008894.3-201ENST00000624324 3103 ntBASIC16.31■□□□□ 0.2
LDB2O43679 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
LDB2O43679 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB2O43679 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms