Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
HMGB3O15347 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 MME-217ENST00000616757 1315 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
HMGB3O15347 PRORSD1P-201ENST00000295112 541 ntBASIC13.23□□□□□ -0.29
HMGB3O15347 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 AC098590.1-201ENST00000468126 897 ntBASIC13.23□□□□□ -0.29
HMGB3O15347 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 DHDH-203ENST00000522614 776 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.23□□□□□ -0.29
HMGB3O15347 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.23□□□□□ -0.29
HMGB3O15347 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 AL023973.1-201ENST00000624619 620 ntBASIC13.23□□□□□ -0.29
HMGB3O15347 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.23□□□□□ -0.29
HMGB3O15347 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.23□□□□□ -0.29
HMGB3O15347 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.23□□□□□ -0.29
HMGB3O15347 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HMGB3O15347 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.22□□□□□ -0.29
HMGB3O15347 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.22□□□□□ -0.29
HMGB3O15347 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HMGB3O15347 STK19B-204ENST00000512515 211 ntBASIC13.22□□□□□ -0.29
HMGB3O15347 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC13.22□□□□□ -0.29
HMGB3O15347 ZNF444P1-201ENST00000559497 298 ntBASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms