Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC27.4■■□□□ 1.98
CUX2O14529 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CUX2O14529 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
CUX2O14529 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC27.4■■□□□ 1.98
CUX2O14529 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC27.39■■□□□ 1.98
CUX2O14529 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC27.39■■□□□ 1.98
CUX2O14529 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC27.39■■□□□ 1.98
CUX2O14529 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC27.39■■□□□ 1.98
CUX2O14529 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC27.39■■□□□ 1.98
CUX2O14529 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC27.39■■□□□ 1.98
CUX2O14529 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
CUX2O14529 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
CUX2O14529 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC27.39■■□□□ 1.98
CUX2O14529 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
CUX2O14529 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC27.39■■□□□ 1.98
CUX2O14529 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC27.39■■□□□ 1.98
CUX2O14529 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CUX2O14529 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
CUX2O14529 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
CUX2O14529 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC27.39■■□□□ 1.97
CUX2O14529 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
CUX2O14529 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 AF254983.2-201ENST00000612331 135 ntBASIC27.38■■□□□ 1.97
CUX2O14529 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
CUX2O14529 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 PFN2-202ENST00000423691 911 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 FAU-202ENST00000434372 533 ntTSL 2 BASIC27.38■■□□□ 1.97
CUX2O14529 NKAIN1P1-201ENST00000435754 582 ntBASIC27.38■■□□□ 1.97
CUX2O14529 AL139008.1-201ENST00000437894 228 ntBASIC27.38■■□□□ 1.97
CUX2O14529 AL596276.2-201ENST00000447525 331 ntBASIC27.38■■□□□ 1.97
CUX2O14529 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC27.38■■□□□ 1.97
CUX2O14529 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 DGAT2L7P-201ENST00000602462 744 ntBASIC27.38■■□□□ 1.97
CUX2O14529 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC27.38■■□□□ 1.97
CUX2O14529 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CUX2O14529 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CUX2O14529 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC27.37■■□□□ 1.97
CUX2O14529 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CUX2O14529 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CUX2O14529 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC27.37■■□□□ 1.97
CUX2O14529 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC27.37■■□□□ 1.97
CUX2O14529 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CUX2O14529 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC27.37■■□□□ 1.97
CUX2O14529 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CUX2O14529 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC27.37■■□□□ 1.97
CUX2O14529 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC27.37■■□□□ 1.97
CUX2O14529 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CUX2O14529 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
CUX2O14529 GNE-204ENST00000539208 2190 ntTSL 2 BASIC27.36■■□□□ 1.97
CUX2O14529 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CUX2O14529 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC27.36■■□□□ 1.97
CUX2O14529 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CUX2O14529 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CUX2O14529 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
CUX2O14529 SERPINA13P-202ENST00000478994 924 ntBASIC27.36■■□□□ 1.97
CUX2O14529 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC27.36■■□□□ 1.97
CUX2O14529 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC27.36■■□□□ 1.97
CUX2O14529 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC27.36■■□□□ 1.97
CUX2O14529 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC27.36■■□□□ 1.97
CUX2O14529 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
CUX2O14529 DIO1-215ENST00000610607 796 ntTSL 5 BASIC27.36■■□□□ 1.97
CUX2O14529 AP001065.2-201ENST00000617205 644 ntBASIC27.36■■□□□ 1.97
CUX2O14529 AC009084.3-201ENST00000623356 437 ntBASIC27.36■■□□□ 1.97
CUX2O14529 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC27.36■■□□□ 1.97
CUX2O14529 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC27.36■■□□□ 1.97
CUX2O14529 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
CUX2O14529 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms