Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AC105233.2-201ENST00000523697 349 ntBASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AF228730.5-201ENST00000530288 346 ntBASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC4Q9NTJ3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 LINC01225-203ENST00000563550 1244 ntBASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC022145.2-201ENST00000598203 171 ntBASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC105339.1-204ENST00000636249 355 ntBASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC4Q9NTJ3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AC142381.1-201ENST00000426099 345 ntBASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AC069335.1-201ENST00000489972 472 ntBASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.96■□□□□ 0.95
SMC4Q9NTJ3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms