Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AP002414.1-201ENST00000391405 1147 ntBASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 MIR5100-201ENST00000579544 119 ntBASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AC138894.3-201ENST00000603787 634 ntBASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AC069148.1-201ENST00000608741 768 ntBASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 BX005266.1-201ENST00000473402 457 ntBASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 DUX4L17-201ENST00000557360 1267 ntBASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AP000550.4-202ENST00000639755 178 ntBASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms