Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AL031432.2-201ENST00000566714 459 ntBASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AL928711.1-201ENST00000570165 459 ntBASIC16.93■□□□□ 0.3
PCDH9Q9HC56 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AC025580.3-201ENST00000617932 1424 ntBASIC16.93■□□□□ 0.3
PCDH9Q9HC56 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 POLD2P1-201ENST00000511220 997 ntBASIC16.92■□□□□ 0.3
PCDH9Q9HC56 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 KRT19P2-202ENST00000557173 1012 ntBASIC16.92■□□□□ 0.3
PCDH9Q9HC56 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 AL671883.3-201ENST00000603274 991 ntBASIC16.92■□□□□ 0.3
PCDH9Q9HC56 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 AC005622.1-201ENST00000636801 1703 ntBASIC16.92■□□□□ 0.3
PCDH9Q9HC56 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDH9Q9HC56 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 HMGA1P7-201ENST00000406908 502 ntBASIC16.91■□□□□ 0.3
PCDH9Q9HC56 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.91■□□□□ 0.3
PCDH9Q9HC56 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDH9Q9HC56 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms