Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 METTL26-214ENST00000614890 801 ntTSL 3 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 ZBTB12BP-201ENST00000314232 1122 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AGER-206ENST00000375070 1463 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC006033.1-201ENST00000440505 426 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC103810.3-201ENST00000583567 96 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 MIR663B-201ENST00000408361 115 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC015910.1-201ENST00000579400 975 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC005695.3-201ENST00000614522 232 ntBASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK3Q9BYB0 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 AC134407.2-201ENST00000625089 1978 ntBASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 RPL13AP25-201ENST00000484130 612 ntBASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK3Q9BYB0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms