Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TERF1P3-201ENST00000505638 1227 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC190387.1-201ENST00000551683 408 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC003101.2-201ENST00000612557 442 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC020765.3-201ENST00000613051 740 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 FER1L4-210ENST00000615531 5998 ntBASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 AC027369.6-201ENST00000525520 931 ntBASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 RN7SL371P-201ENST00000578099 267 ntBASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 AC008761.3-201ENST00000624803 892 ntBASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAIPQ9BWF2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
TRAIPQ9BWF2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AL603756.1-201ENST00000606511 2163 ntBASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 MRPS18AP1-201ENST00000414458 589 ntBASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AC093724.1-201ENST00000448659 1027 ntBASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms