Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 AC093520.2-201ENST00000561830 333 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 CYP2A7P1-201ENST00000595391 815 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TUBB8P12-201ENST00000308911 1335 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TUBB7P-202ENST00000428444 1305 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TUBB8P7-204ENST00000567960 1332 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC060834.1-201ENST00000443027 2032 ntBASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 SPCS2P4-201ENST00000436160 681 ntBASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC124947.2-201ENST00000547118 1133 ntBASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 AD000864.1-201ENST00000624076 2295 ntBASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLIP3Q96DZ5 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 AC069335.1-201ENST00000489972 472 ntBASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 MIR3909-201ENST00000579518 119 ntBASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 AC093512.1-201ENST00000617969 520 ntBASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 PCDHB17P-201ENST00000539533 2393 ntBASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.86■□□□□ 0.13
CLIP3Q96DZ5 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms