Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC079140.1-201ENST00000508039 487 ntBASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 AC069335.1-201ENST00000489972 472 ntBASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 BANF1P1-201ENST00000553684 263 ntBASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 SPTSSB-204ENST00000617024 1292 ntBASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 AC132872.4-202ENST00000622924 2756 ntBASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHROOM3Q8TF72 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 FAM86C2P-203ENST00000528684 1004 ntBASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AC093520.2-201ENST00000561830 333 ntBASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHROOM3Q8TF72 AC008894.3-201ENST00000624324 3103 ntBASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 AC008677.1-201ENST00000519230 1561 ntBASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 MIR648-201ENST00000385046 94 ntBASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 MEIS3P1-201ENST00000495167 958 ntBASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.61■□□□□ 0.25
SHROOM3Q8TF72 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms