Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 LINC01144-201ENST00000626198 1710 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AC005332.8-201ENST00000622750 2735 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 SPDYE19P-201ENST00000338590 713 ntBASIC15.87■□□□□ 0.13
LMX1AQ8TE12 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 DOC2GP-202ENST00000514950 1163 ntBASIC15.87■□□□□ 0.13
LMX1AQ8TE12 ZNF890P-202ENST00000530367 1156 ntBASIC15.87■□□□□ 0.13
LMX1AQ8TE12 API5-211ENST00000534695 560 ntTSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 AC140912.1-201ENST00000577171 1054 ntBASIC15.87■□□□□ 0.13
LMX1AQ8TE12 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
LMX1AQ8TE12 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 COX5BP8-201ENST00000416911 349 ntBASIC15.86■□□□□ 0.13
LMX1AQ8TE12 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 KRT17P7-201ENST00000451704 1104 ntBASIC15.86■□□□□ 0.13
LMX1AQ8TE12 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.86■□□□□ 0.13
LMX1AQ8TE12 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LMX1AQ8TE12 GGT3P-204ENST00000453783 1664 ntBASIC15.86■□□□□ 0.13
LMX1AQ8TE12 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms