Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 TREML5P-201ENST00000421694 576 ntBASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 MIR4453-201ENST00000584019 89 ntBASIC15.22■□□□□ 0.03
BEST3Q8N1M1 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 FO538757.1-201ENST00000623083 1397 ntBASIC15.22■□□□□ 0.03
BEST3Q8N1M1 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AL645728.1-201ENST00000366221 2101 ntBASIC15.22■□□□□ 0.03
BEST3Q8N1M1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 RNA5SP421-201ENST00000516864 134 ntBASIC15.21■□□□□ 0.03
BEST3Q8N1M1 IGHV3-42-201ENST00000520410 361 ntBASIC15.21■□□□□ 0.03
BEST3Q8N1M1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 RARRES2P9-201ENST00000565168 469 ntBASIC15.21■□□□□ 0.03
BEST3Q8N1M1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
BEST3Q8N1M1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 AC073439.1-201ENST00000624121 1774 ntBASIC15.21■□□□□ 0.02
BEST3Q8N1M1 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
BEST3Q8N1M1 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.2■□□□□ 0.02
BEST3Q8N1M1 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms