Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 KRT18P64-201ENST00000434946 1219 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC012441.1-201ENST00000446669 685 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 RIT1-205ENST00000539040 919 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC079316.1-201ENST00000548397 411 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC120045.2-201ENST00000567334 178 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC009486.1-201ENST00000569860 813 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC091271.1-201ENST00000611877 1162 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 LINC01144-201ENST00000626198 1710 ntBASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.82■■□□□ 1.08
KRT28Q7Z3Y7 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 AGER-203ENST00000375065 665 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 AC092506.1-202ENST00000401022 528 ntBASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 AC093433.1-201ENST00000458048 571 ntBASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 AC106760.1-201ENST00000508690 800 ntBASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 RHOQP1-201ENST00000555758 579 ntBASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 RETN-203ENST00000629642 400 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT28Q7Z3Y7 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 PP12613-201ENST00000424958 2230 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 C1QBPP1-201ENST00000400117 770 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 KRT8P13-201ENST00000463294 1010 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 DUX4L45-201ENST00000566406 1057 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 AL049840.4-201ENST00000602422 811 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 AL118558.3-201ENST00000607414 1079 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 RHOXF1P1-202ENST00000635473 501 ntBASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT28Q7Z3Y7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms