Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 MCCD1P2-201ENST00000423228 335 ntBASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AC245100.3-201ENST00000441281 285 ntBASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 MIR4745-201ENST00000577608 62 ntBASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 UNC93B6-202ENST00000528242 690 ntBASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AC012640.2-201ENST00000561606 901 ntBASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 AL662844.4-201ENST00000606367 2838 ntBASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.67□□□□□ -0.22
PDLIM3Q53GG5 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 PCDHA3-202ENST00000532566 4594 ntBASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PDLIM3Q53GG5 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms