Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 AC021097.1-201ENST00000607902 574 ntBASIC15.96■□□□□ 0.15
YBX1P67809 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
YBX1P67809 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.96■□□□□ 0.15
YBX1P67809 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
YBX1P67809 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
YBX1P67809 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
YBX1P67809 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
YBX1P67809 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
YBX1P67809 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
YBX1P67809 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.95■□□□□ 0.14
YBX1P67809 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
YBX1P67809 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
YBX1P67809 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.95■□□□□ 0.14
YBX1P67809 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.95■□□□□ 0.14
YBX1P67809 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 AC243562.1-201ENST00000560672 389 ntBASIC15.95■□□□□ 0.14
YBX1P67809 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 AL135744.1-201ENST00000565098 629 ntBASIC15.95■□□□□ 0.14
YBX1P67809 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.95■□□□□ 0.14
YBX1P67809 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.95■□□□□ 0.14
YBX1P67809 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 AC134684.3-201ENST00000641758 218 ntBASIC15.95■□□□□ 0.14
YBX1P67809 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
YBX1P67809 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.95■□□□□ 0.14
YBX1P67809 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
YBX1P67809 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
YBX1P67809 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
YBX1P67809 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 TFAMP1-201ENST00000412727 736 ntBASIC15.94■□□□□ 0.14
YBX1P67809 RPS8P6-201ENST00000426177 609 ntBASIC15.94■□□□□ 0.14
YBX1P67809 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.94■□□□□ 0.14
YBX1P67809 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.94■□□□□ 0.14
YBX1P67809 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.94■□□□□ 0.14
YBX1P67809 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.94■□□□□ 0.14
YBX1P67809 RARRES2P8-201ENST00000566335 367 ntBASIC15.94■□□□□ 0.14
YBX1P67809 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.94■□□□□ 0.14
YBX1P67809 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.94■□□□□ 0.14
YBX1P67809 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.94■□□□□ 0.14
YBX1P67809 AC139530.3-201ENST00000620344 690 ntBASIC15.94■□□□□ 0.14
YBX1P67809 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
YBX1P67809 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.94■□□□□ 0.14
YBX1P67809 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms