Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 USP40-206ENST00000443711 628 ntTSL 2 BASIC23■■□□□ 1.27
CLTCL1P53675 AC022494.1-201ENST00000466044 728 ntBASIC23■■□□□ 1.27
CLTCL1P53675 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC23■■□□□ 1.27
CLTCL1P53675 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC23■■□□□ 1.27
CLTCL1P53675 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC23■■□□□ 1.27
CLTCL1P53675 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC23■■□□□ 1.27
CLTCL1P53675 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC23■■□□□ 1.27
CLTCL1P53675 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC23■■□□□ 1.27
CLTCL1P53675 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
CLTCL1P53675 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC23■■□□□ 1.27
CLTCL1P53675 HNRNPA1P13-201ENST00000510646 963 ntBASIC23■■□□□ 1.27
CLTCL1P53675 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC23■■□□□ 1.27
CLTCL1P53675 AP005482.1-201ENST00000563722 1273 ntBASIC23■■□□□ 1.27
CLTCL1P53675 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC23■■□□□ 1.27
CLTCL1P53675 AC120045.2-201ENST00000567334 178 ntBASIC23■■□□□ 1.27
CLTCL1P53675 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC23■■□□□ 1.27
CLTCL1P53675 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLTCL1P53675 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC22.99■■□□□ 1.27
CLTCL1P53675 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CLTCL1P53675 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 AC022211.2-201ENST00000585075 2527 ntBASIC22.99■■□□□ 1.27
CLTCL1P53675 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CLTCL1P53675 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CLTCL1P53675 AC104596.2-201ENST00000512793 793 ntBASIC22.99■■□□□ 1.27
CLTCL1P53675 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC22.99■■□□□ 1.27
CLTCL1P53675 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC22.99■■□□□ 1.27
CLTCL1P53675 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC22.99■■□□□ 1.27
CLTCL1P53675 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC22.99■■□□□ 1.27
CLTCL1P53675 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC22.99■■□□□ 1.27
CLTCL1P53675 CU634019.7-201ENST00000624153 1185 ntBASIC22.99■■□□□ 1.27
CLTCL1P53675 FP236241.2-201ENST00000624906 1185 ntBASIC22.99■■□□□ 1.27
CLTCL1P53675 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC22.99■■□□□ 1.27
CLTCL1P53675 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CLTCL1P53675 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLTCL1P53675 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 AC068587.3-201ENST00000526613 355 ntBASIC22.98■■□□□ 1.27
CLTCL1P53675 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
CLTCL1P53675 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 AL359711.2-201ENST00000563105 872 ntBASIC22.98■■□□□ 1.27
CLTCL1P53675 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 RPS24-214ENST00000613865 538 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 AMT-233ENST00000636522 1620 ntTSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
CLTCL1P53675 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLTCL1P53675 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CLTCL1P53675 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
CLTCL1P53675 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC22.97■■□□□ 1.27
CLTCL1P53675 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC22.97■■□□□ 1.27
CLTCL1P53675 AC000095.1-201ENST00000603208 874 ntBASIC22.97■■□□□ 1.27
CLTCL1P53675 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
CLTCL1P53675 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC22.97■■□□□ 1.27
CLTCL1P53675 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 RERG-209ENST00000546331 1383 ntTSL 2 BASIC22.97■■□□□ 1.27
CLTCL1P53675 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC22.97■■□□□ 1.27
CLTCL1P53675 AC106886.4-201ENST00000623557 2502 ntBASIC22.97■■□□□ 1.27
CLTCL1P53675 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
CLTCL1P53675 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC22.97■■□□□ 1.27
CLTCL1P53675 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLTCL1P53675 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms