Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 IGHJ2P-201ENST00000454480 60 ntBASIC17.22■□□□□ 0.35
COL4A4P53420 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL4A4P53420 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.22■□□□□ 0.35
COL4A4P53420 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL4A4P53420 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 GNRHR2-203ENST00000581100 1187 ntBASIC17.22■□□□□ 0.35
COL4A4P53420 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A4P53420 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL4A4P53420 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL4A4P53420 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.21■□□□□ 0.35
COL4A4P53420 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL4A4P53420 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL4A4P53420 AC020765.3-201ENST00000613051 740 ntBASIC17.21■□□□□ 0.35
COL4A4P53420 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.21■□□□□ 0.35
COL4A4P53420 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.21■□□□□ 0.35
COL4A4P53420 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL4A4P53420 AC012313.1-201ENST00000593393 3059 ntBASIC17.21■□□□□ 0.35
COL4A4P53420 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL4A4P53420 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A4P53420 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.21■□□□□ 0.34
COL4A4P53420 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL4A4P53420 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL4A4P53420 MTHFR-217ENST00000641820 1569 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL4A4P53420 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A4P53420 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A4P53420 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 AC124283.3-201ENST00000570869 594 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 CU634019.7-201ENST00000624153 1185 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 FP236241.2-201ENST00000624906 1185 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 AC092171.3-201ENST00000610122 2651 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL4A4P53420 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A4P53420 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.2■□□□□ 0.34
COL4A4P53420 RPL7P3-201ENST00000441388 714 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A4P53420 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A4P53420 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.2■□□□□ 0.34
COL4A4P53420 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.2■□□□□ 0.34
COL4A4P53420 BRI3BPP1-201ENST00000594224 787 ntBASIC17.2■□□□□ 0.34
COL4A4P53420 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.19■□□□□ 0.34
COL4A4P53420 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.19■□□□□ 0.34
COL4A4P53420 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 UBALD1-205ENST00000590891 2641 ntBASIC17.19■□□□□ 0.34
COL4A4P53420 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
COL4A4P53420 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.19■□□□□ 0.34
COL4A4P53420 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 AC104596.2-201ENST00000512793 793 ntBASIC17.19■□□□□ 0.34
COL4A4P53420 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 TDH-203ENST00000531764 1110 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms