Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
LHX1P48742 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LHX1P48742 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.27■□□□□ 0.35
LHX1P48742 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX1P48742 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LHX1P48742 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.27■□□□□ 0.35
LHX1P48742 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
LHX1P48742 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.26■□□□□ 0.35
LHX1P48742 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LHX1P48742 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LHX1P48742 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LHX1P48742 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 AL512638.1-201ENST00000457493 794 ntBASIC17.26■□□□□ 0.35
LHX1P48742 INGX-202ENST00000489074 768 ntBASIC17.26■□□□□ 0.35
LHX1P48742 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.26■□□□□ 0.35
LHX1P48742 AL079307.3-201ENST00000556114 283 ntBASIC17.26■□□□□ 0.35
LHX1P48742 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.26■□□□□ 0.35
LHX1P48742 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.26■□□□□ 0.35
LHX1P48742 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 AL590560.3-201ENST00000623350 461 ntBASIC17.26■□□□□ 0.35
LHX1P48742 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX1P48742 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX1P48742 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LHX1P48742 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.25■□□□□ 0.35
LHX1P48742 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LHX1P48742 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 AC100757.3-201ENST00000622361 1406 ntBASIC17.25■□□□□ 0.35
LHX1P48742 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 BCRP1-201ENST00000444246 691 ntBASIC17.25■□□□□ 0.35
LHX1P48742 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.25■□□□□ 0.35
LHX1P48742 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.25■□□□□ 0.35
LHX1P48742 AJ011932.1-201ENST00000621707 465 ntBASIC17.25■□□□□ 0.35
LHX1P48742 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.25■□□□□ 0.35
LHX1P48742 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX1P48742 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LHX1P48742 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX1P48742 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 CROCCP1-201ENST00000426910 5675 ntBASIC17.24■□□□□ 0.35
LHX1P48742 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.24■□□□□ 0.35
LHX1P48742 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.24■□□□□ 0.35
LHX1P48742 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms