Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CDX1P47902 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.46□□□□□ -0.25
CDX1P47902 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.46□□□□□ -0.25
CDX1P47902 AL359258.3-201ENST00000622910 2331 ntBASIC13.46□□□□□ -0.25
CDX1P47902 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
CDX1P47902 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CDX1P47902 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 ACTG1P4-201ENST00000425123 1122 ntBASIC13.46□□□□□ -0.25
CDX1P47902 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.46□□□□□ -0.25
CDX1P47902 RNA5SP415-201ENST00000517246 115 ntBASIC13.46□□□□□ -0.25
CDX1P47902 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.46□□□□□ -0.25
CDX1P47902 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.46□□□□□ -0.25
CDX1P47902 AL139424.1-201ENST00000607572 797 ntBASIC13.46□□□□□ -0.25
CDX1P47902 AL139327.4-201ENST00000612362 153 ntBASIC13.46□□□□□ -0.25
CDX1P47902 AC117500.6-201ENST00000624871 588 ntBASIC13.46□□□□□ -0.25
CDX1P47902 GRK6P1-201ENST00000400595 1711 ntBASIC13.46□□□□□ -0.25
CDX1P47902 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CDX1P47902 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.46□□□□□ -0.26
CDX1P47902 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
CDX1P47902 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.26
CDX1P47902 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.46□□□□□ -0.26
CDX1P47902 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CDX1P47902 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.46□□□□□ -0.26
CDX1P47902 AC046185.3-201ENST00000623228 1824 ntBASIC13.46□□□□□ -0.26
CDX1P47902 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 GPR89P-201ENST00000407924 1495 ntBASIC13.45□□□□□ -0.26
CDX1P47902 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 AL591424.1-201ENST00000442569 1213 ntBASIC13.45□□□□□ -0.26
CDX1P47902 UNC93B6-202ENST00000528242 690 ntBASIC13.45□□□□□ -0.26
CDX1P47902 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.45□□□□□ -0.26
CDX1P47902 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.45□□□□□ -0.26
CDX1P47902 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.45□□□□□ -0.26
CDX1P47902 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CDX1P47902 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.45□□□□□ -0.26
CDX1P47902 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms