Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
HNF4AP41235 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
HNF4AP41235 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
HNF4AP41235 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.93■□□□□ 0.14
HNF4AP41235 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.93■□□□□ 0.14
HNF4AP41235 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.93■□□□□ 0.14
HNF4AP41235 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
HNF4AP41235 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
HNF4AP41235 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.93■□□□□ 0.14
HNF4AP41235 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.93■□□□□ 0.14
HNF4AP41235 PMS2P7-201ENST00000506558 1336 ntBASIC15.93■□□□□ 0.14
HNF4AP41235 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HNF4AP41235 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.92■□□□□ 0.14
HNF4AP41235 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.92■□□□□ 0.14
HNF4AP41235 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.92■□□□□ 0.14
HNF4AP41235 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.92■□□□□ 0.14
HNF4AP41235 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.92■□□□□ 0.14
HNF4AP41235 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.92■□□□□ 0.14
HNF4AP41235 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.92■□□□□ 0.14
HNF4AP41235 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.92■□□□□ 0.14
HNF4AP41235 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.92■□□□□ 0.14
HNF4AP41235 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 AC008741.2-201ENST00000612792 3115 ntBASIC15.92■□□□□ 0.14
HNF4AP41235 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
HNF4AP41235 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
HNF4AP41235 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HNF4AP41235 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.92■□□□□ 0.14
HNF4AP41235 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 AL596087.1-201ENST00000400979 1969 ntBASIC15.91■□□□□ 0.14
HNF4AP41235 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 AC068418.2-201ENST00000577309 3703 ntBASIC15.91■□□□□ 0.14
HNF4AP41235 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms