Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SCN4AP35499 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SCN4AP35499 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.95■□□□□ 0.62
SCN4AP35499 KRT18P43-201ENST00000469825 1281 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.95■□□□□ 0.62
SCN4AP35499 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 AC243562.2-201ENST00000561247 970 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.95■□□□□ 0.62
SCN4AP35499 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 AL451050.2-201ENST00000606967 682 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 AC104581.1-202ENST00000635932 2618 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.94■□□□□ 0.62
SCN4AP35499 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.94■□□□□ 0.62
SCN4AP35499 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SCN4AP35499 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.94■□□□□ 0.62
SCN4AP35499 POM121L10P-201ENST00000436994 1285 ntBASIC18.94■□□□□ 0.62
SCN4AP35499 MAGEA5-201ENST00000446757 942 ntBASIC18.94■□□□□ 0.62
SCN4AP35499 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SCN4AP35499 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.94■□□□□ 0.62
SCN4AP35499 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.94■□□□□ 0.62
SCN4AP35499 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SCN4AP35499 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SCN4AP35499 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 ACKR1-201ENST00000368121 1240 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
SCN4AP35499 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 FAM197Y7-201ENST00000432892 766 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.93■□□□□ 0.62
SCN4AP35499 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.93■□□□□ 0.62
SCN4AP35499 AC104982.3-201ENST00000581995 514 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.93■□□□□ 0.62
SCN4AP35499 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 DRD5P1-201ENST00000456605 1438 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 AC091046.1-201ENST00000331871 207 ntBASIC18.93■□□□□ 0.62
SCN4AP35499 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
SCN4AP35499 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.93■□□□□ 0.62
SCN4AP35499 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.93■□□□□ 0.62
SCN4AP35499 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.93■□□□□ 0.62
SCN4AP35499 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SCN4AP35499 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.92■□□□□ 0.62
SCN4AP35499 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.92■□□□□ 0.62
SCN4AP35499 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.92■□□□□ 0.62
SCN4AP35499 AL121723.1-201ENST00000445194 1519 ntBASIC18.92■□□□□ 0.62
SCN4AP35499 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.92■□□□□ 0.62
SCN4AP35499 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.92■□□□□ 0.62
SCN4AP35499 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SCN4AP35499 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.92■□□□□ 0.62
SCN4AP35499 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SCN4AP35499 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SCN4AP35499 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN4AP35499 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SCN4AP35499 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms