Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 AC144831.1-201ENST00000573312 2656 ntBASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHA3Q9Y5H8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 MIR7706-201ENST00000613747 67 ntBASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 HYMAI-201ENST00000635591 3347 ntBASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHA3Q9Y5H8 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC022532.1-201ENST00000624563 1728 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 PRAL-201ENST00000624952 3286 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AL031284.1-201ENST00000419297 478 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC098831.1-202ENST00000438821 336 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC009947.1-201ENST00000444350 727 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AL773604.1-201ENST00000617417 272 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC013268.4-201ENST00000637413 2228 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 AL513477.1-201ENST00000602865 2407 ntBASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHA3Q9Y5H8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHA3Q9Y5H8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms