Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.64■□□□□ 0.73
ZC3H4Q9UPT8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 AC133963.1-201ENST00000504166 1679 ntBASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 AC016396.2-201ENST00000562575 1417 ntBASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 Z97205.2-201ENST00000564697 1639 ntBASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 AC106820.2-201ENST00000563775 3264 ntBASIC19.63■□□□□ 0.73
ZC3H4Q9UPT8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
ZC3H4Q9UPT8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC016629.1-201ENST00000596579 586 ntBASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC244452.3-201ENST00000636814 210 ntBASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC134043.2-201ENST00000624206 2238 ntBASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 AC138932.1-201ENST00000534164 6830 ntBASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZC3H4Q9UPT8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms