Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMCH1Q9UPQ0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 AC092474.2-201ENST00000424288 719 ntBASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 AC008677.1-201ENST00000519230 1561 ntBASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMCH1Q9UPQ0 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 SLC25A6P4-201ENST00000586535 553 ntBASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMCH1Q9UPQ0 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AC079776.4-201ENST00000511039 504 ntBASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 KRT126P-201ENST00000549467 1181 ntBASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AC023141.13-201ENST00000604991 943 ntBASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms