Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 AC027307.2-201ENST00000591252 911 ntBASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SMC4Q9NTJ3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
SMC4Q9NTJ3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC21.02■□□□□ 0.95
SMC4Q9NTJ3 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMC4Q9NTJ3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.95
SMC4Q9NTJ3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 PCDHA1-201ENST00000378133 2726 ntBASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 AL513523.2-202ENST00000427283 2040 ntBASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 MIR3687-2-201ENST00000577708 61 ntBASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 MIR3687-1-201ENST00000614492 61 ntBASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMC4Q9NTJ3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 FOXO1B-201ENST00000504678 1527 ntBASIC21■□□□□ 0.95
SMC4Q9NTJ3 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 COA5-202ENST00000409997 557 ntTSL 4 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 AC073389.1-201ENST00000595595 795 ntBASIC21■□□□□ 0.95
SMC4Q9NTJ3 AC008267.7-201ENST00000624570 1194 ntBASIC21■□□□□ 0.95
SMC4Q9NTJ3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC21■□□□□ 0.95
SMC4Q9NTJ3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMC4Q9NTJ3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AL589702.1-201ENST00000641229 1509 ntBASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.99■□□□□ 0.95
SMC4Q9NTJ3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms