Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 AL096828.3-201ENST00000615354 462 ntBASIC15.91■□□□□ 0.14
VPS13AQ96RL7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 LINC01451-201ENST00000623792 534 ntBASIC15.91■□□□□ 0.14
VPS13AQ96RL7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS13AQ96RL7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC104982.3-201ENST00000581995 514 ntBASIC15.9■□□□□ 0.14
VPS13AQ96RL7 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC009053.2-201ENST00000563701 2365 ntBASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AL355864.2-201ENST00000447420 863 ntBASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC106760.1-201ENST00000508690 800 ntBASIC15.9■□□□□ 0.14
VPS13AQ96RL7 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 AC018695.7-201ENST00000624587 2492 ntBASIC15.9■□□□□ 0.14
VPS13AQ96RL7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13AQ96RL7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.89■□□□□ 0.14
VPS13AQ96RL7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
VPS13AQ96RL7 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 RPL13P2-201ENST00000440687 659 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AC116353.5-201ENST00000638148 1699 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 CLUHP6-201ENST00000580789 941 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 RNF165-205ENST00000588679 2904 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms