Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 MRPL20P1-201ENST00000400819 433 ntBASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 MIR3909-201ENST00000579518 119 ntBASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 AC097376.2-205ENST00000610159 5334 ntBASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 MIR648-201ENST00000385046 94 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AF238378.1-201ENST00000526806 358 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AC021097.1-201ENST00000607902 574 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AC008735.5-201ENST00000623544 497 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AC005593.1-201ENST00000624894 515 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AL365203.3-201ENST00000609742 2057 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 AC012569.1-201ENST00000591191 1524 ntBASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC54Q8NEL0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC54Q8NEL0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms