Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 PCDHA1-201ENST00000378133 2726 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 AP006288.1-201ENST00000446065 395 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 AC004967.1-201ENST00000453589 447 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 AP000344.2-201ENST00000512987 629 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
VRK3Q8IV63 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 AL596442.2-201ENST00000610240 980 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 SPTSSB-204ENST00000617024 1292 ntBASIC16■□□□□ 0.15
VRK3Q8IV63 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16■□□□□ 0.15
VRK3Q8IV63 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16■□□□□ 0.15
VRK3Q8IV63 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
VRK3Q8IV63 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VRK3Q8IV63 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 AL627223.1-201ENST00000416693 442 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 RPS8P6-201ENST00000426177 609 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 AC005237.2-201ENST00000434368 219 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 DNAJB3-202ENST00000449667 1266 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 KRT8P23-201ENST00000560090 1207 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 AC084121.4-201ENST00000641598 221 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 AF228730.8-201ENST00000642140 221 ntBASIC15.99■□□□□ 0.15
VRK3Q8IV63 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms