Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 AL645728.1-201ENST00000366221 2101 ntBASIC21.92■■□□□ 1.1
NPHP3Q7Z494 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NPHP3Q7Z494 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 AC006538.1-201ENST00000567905 1585 ntBASIC21.91■■□□□ 1.1
NPHP3Q7Z494 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 CALR4P-201ENST00000431943 946 ntBASIC21.91■■□□□ 1.1
NPHP3Q7Z494 OLR1-203ENST00000432556 950 ntTSL 2 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 RERG-209ENST00000546331 1383 ntTSL 2 BASIC21.91■■□□□ 1.1
NPHP3Q7Z494 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 C1QBPP1-201ENST00000400117 770 ntBASIC21.9■■□□□ 1.1
NPHP3Q7Z494 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 AL118558.3-201ENST00000607414 1079 ntBASIC21.9■■□□□ 1.1
NPHP3Q7Z494 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NPHP3Q7Z494 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 MSTO2P-201ENST00000314835 1709 ntBASIC21.89■■□□□ 1.1
NPHP3Q7Z494 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 AC004987.2-201ENST00000395959 1148 ntBASIC21.89■■□□□ 1.1
NPHP3Q7Z494 SLC25A24P2-201ENST00000415059 510 ntBASIC21.89■■□□□ 1.1
NPHP3Q7Z494 TOMM22P5-201ENST00000416399 439 ntBASIC21.89■■□□□ 1.1
NPHP3Q7Z494 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC21.89■■□□□ 1.1
NPHP3Q7Z494 AL049840.4-201ENST00000602422 811 ntBASIC21.89■■□□□ 1.1
NPHP3Q7Z494 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 AC134312.5-201ENST00000568031 1313 ntBASIC21.89■■□□□ 1.09
NPHP3Q7Z494 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NPHP3Q7Z494 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP3Q7Z494 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP3Q7Z494 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
NPHP3Q7Z494 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms