Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AKAP8P1-201ENST00000434743 1349 ntBASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 BX842568.4-201ENST00000421222 227 ntBASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 HTR5BP-201ENST00000430851 1154 ntBASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 AC005829.1-201ENST00000570002 483 ntBASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 AC005622.1-201ENST00000636801 1703 ntBASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 CYP2T1P-202ENST00000641596 2535 ntBASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNE3Q6ZMZ3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 TFAMP1-201ENST00000412727 736 ntBASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 AL355306.1-201ENST00000415580 579 ntBASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms