Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.02■□□□□ 0.31
CHD9Q3L8U1 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 AC139713.2-201ENST00000641328 2723 ntBASIC17.01■□□□□ 0.31
CHD9Q3L8U1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AC106820.2-201ENST00000563775 3264 ntBASIC17.01■□□□□ 0.31
CHD9Q3L8U1 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AC097724.1-201ENST00000609581 426 ntBASIC17.01■□□□□ 0.31
CHD9Q3L8U1 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AC104982.3-201ENST00000581995 514 ntBASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 UBALD1-205ENST00000590891 2641 ntBASIC17.01■□□□□ 0.31
CHD9Q3L8U1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.01■□□□□ 0.31
CHD9Q3L8U1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17■□□□□ 0.31
CHD9Q3L8U1 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CHD9Q3L8U1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17■□□□□ 0.31
CHD9Q3L8U1 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17■□□□□ 0.31
CHD9Q3L8U1 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17■□□□□ 0.31
CHD9Q3L8U1 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17■□□□□ 0.31
CHD9Q3L8U1 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17■□□□□ 0.31
CHD9Q3L8U1 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17■□□□□ 0.31
CHD9Q3L8U1 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17■□□□□ 0.31
CHD9Q3L8U1 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17■□□□□ 0.31
CHD9Q3L8U1 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17■□□□□ 0.31
CHD9Q3L8U1 HNRNPUP1-201ENST00000554987 333 ntBASIC17■□□□□ 0.31
CHD9Q3L8U1 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17■□□□□ 0.31
CHD9Q3L8U1 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17■□□□□ 0.31
CHD9Q3L8U1 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 AL133373.2-201ENST00000623187 2828 ntBASIC17■□□□□ 0.31
CHD9Q3L8U1 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17■□□□□ 0.31
CHD9Q3L8U1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHD9Q3L8U1 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 AZGP1P1-201ENST00000411909 902 ntBASIC16.99■□□□□ 0.31
CHD9Q3L8U1 AL355334.1-201ENST00000417713 215 ntBASIC16.99■□□□□ 0.31
CHD9Q3L8U1 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 AP001063.1-201ENST00000568332 529 ntBASIC16.99■□□□□ 0.31
CHD9Q3L8U1 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 FZD10-202ENST00000539839 3282 ntBASIC16.99■□□□□ 0.31
CHD9Q3L8U1 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHD9Q3L8U1 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms