Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
TFF3Q07654 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.38□□□□□ -0.11
TFF3Q07654 AC124947.2-201ENST00000547118 1133 ntBASIC14.38□□□□□ -0.11
TFF3Q07654 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.38□□□□□ -0.11
TFF3Q07654 AC010336.2-201ENST00000564226 506 ntBASIC14.38□□□□□ -0.11
TFF3Q07654 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
TFF3Q07654 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
TFF3Q07654 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
TFF3Q07654 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 CROCCP1-201ENST00000426910 5675 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 INE1-201ENST00000456273 945 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.37□□□□□ -0.11
TFF3Q07654 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.37□□□□□ -0.11
TFF3Q07654 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 HILS1-202ENST00000545329 423 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 AL512361.1-201ENST00000554200 418 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 TUBB8P12-201ENST00000308911 1335 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 TUBB7P-202ENST00000428444 1305 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 TUBB8P7-204ENST00000567960 1332 ntBASIC14.37□□□□□ -0.11
TFF3Q07654 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.37□□□□□ -0.11
TFF3Q07654 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TFF3Q07654 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.37□□□□□ -0.11
TFF3Q07654 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 LINC02012-201ENST00000608206 1725 ntBASIC14.36□□□□□ -0.11
TFF3Q07654 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.36□□□□□ -0.11
TFF3Q07654 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.36□□□□□ -0.11
TFF3Q07654 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
TFF3Q07654 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms