Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXA1P55317 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXA1P55317 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXA1P55317 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXA1P55317 AC104692.2-201ENST00000603054 253 ntBASIC15.87■□□□□ 0.13
FOXA1P55317 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXA1P55317 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXA1P55317 AC092919.2-201ENST00000623631 1645 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 U82695.1-201ENST00000635752 1889 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXA1P55317 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 AC013268.4-201ENST00000637413 2228 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 AL031284.1-201ENST00000419297 478 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXA1P55317 AP002469.2-201ENST00000531724 424 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 AL031432.2-201ENST00000566714 459 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 AL928711.1-201ENST00000570165 459 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 MIR3909-201ENST00000579518 119 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXA1P55317 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXA1P55317 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 AC008677.1-201ENST00000519230 1561 ntBASIC15.86■□□□□ 0.13
FOXA1P55317 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXA1P55317 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
FOXA1P55317 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXA1P55317 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA1P55317 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
FOXA1P55317 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms