Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
CDH6P55285 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.08■□□□□ 0.32
CDH6P55285 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 KRT18P34-201ENST00000488218 1270 ntBASIC17.08■□□□□ 0.32
CDH6P55285 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.08■□□□□ 0.32
CDH6P55285 PDPK2P-202ENST00000562415 1191 ntBASIC17.08■□□□□ 0.32
CDH6P55285 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 AL078644.1-201ENST00000609881 752 ntBASIC17.08■□□□□ 0.32
CDH6P55285 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH6P55285 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH6P55285 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH6P55285 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 AC016027.1-202ENST00000607927 1699 ntBASIC17.07■□□□□ 0.32
CDH6P55285 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDH6P55285 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDH6P55285 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH6P55285 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH6P55285 AC074386.1-202ENST00000463561 864 ntBASIC17.07■□□□□ 0.32
CDH6P55285 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CDH6P55285 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH6P55285 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 AC068137.2-201ENST00000605408 478 ntBASIC17.07■□□□□ 0.32
CDH6P55285 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH6P55285 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 AC092865.6-201ENST00000642101 219 ntBASIC17.07■□□□□ 0.32
CDH6P55285 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH6P55285 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH6P55285 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH6P55285 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH6P55285 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH6P55285 AL592424.1-201ENST00000563624 1536 ntBASIC17.06■□□□□ 0.32
CDH6P55285 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CDH6P55285 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.06■□□□□ 0.32
CDH6P55285 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDH6P55285 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH6P55285 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms