Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A4P53420 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
COL4A4P53420 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A4P53420 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A4P53420 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A4P53420 FTH1P14-201ENST00000482930 551 ntBASIC17.24■□□□□ 0.35
COL4A4P53420 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A4P53420 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A4P53420 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A4P53420 RARRES2P5-201ENST00000564013 466 ntBASIC17.24■□□□□ 0.35
COL4A4P53420 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL4A4P53420 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A4P53420 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
COL4A4P53420 PCDHA12-202ENST00000613593 2588 ntBASIC17.24■□□□□ 0.35
COL4A4P53420 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 NKILA-202ENST00000614771 2598 ntBASIC17.24■□□□□ 0.35
COL4A4P53420 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL4A4P53420 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COL4A4P53420 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 C2orf69P2-201ENST00000562032 1123 ntBASIC17.23■□□□□ 0.35
COL4A4P53420 AC036164.1-201ENST00000570544 333 ntBASIC17.23■□□□□ 0.35
COL4A4P53420 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
COL4A4P53420 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 PCGF3-213ENST00000620529 1899 ntBASIC17.23■□□□□ 0.35
COL4A4P53420 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A4P53420 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A4P53420 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.23■□□□□ 0.35
COL4A4P53420 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.23■□□□□ 0.35
COL4A4P53420 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A4P53420 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.23■□□□□ 0.35
COL4A4P53420 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.23■□□□□ 0.35
COL4A4P53420 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A4P53420 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
COL4A4P53420 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A4P53420 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A4P53420 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.22■□□□□ 0.35
COL4A4P53420 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL4A4P53420 ME2P1-201ENST00000426028 1970 ntBASIC17.22■□□□□ 0.35
COL4A4P53420 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL4A4P53420 AL442647.2-201ENST00000429864 857 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms