Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL136982.4-201ENST00000437689 1740 ntBASIC16.66■□□□□ 0.26
VCANP13611 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.66■□□□□ 0.26
VCANP13611 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.66■□□□□ 0.26
VCANP13611 AC044849.1-201ENST00000519737 1188 ntBASIC16.66■□□□□ 0.26
VCANP13611 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.66■□□□□ 0.26
VCANP13611 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.66■□□□□ 0.26
VCANP13611 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.66■□□□□ 0.26
VCANP13611 AC135050.7-201ENST00000624508 2218 ntBASIC16.66■□□□□ 0.26
VCANP13611 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.66■□□□□ 0.26
VCANP13611 NUP210P1-202ENST00000504322 710 ntBASIC16.66■□□□□ 0.26
VCANP13611 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
VCANP13611 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
VCANP13611 LINC02199-201ENST00000506655 2702 ntBASIC16.66■□□□□ 0.26
VCANP13611 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VCANP13611 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.66■□□□□ 0.26
VCANP13611 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCANP13611 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VCANP13611 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 AC006001.1-201ENST00000325130 474 ntBASIC16.65■□□□□ 0.26
VCANP13611 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.65■□□□□ 0.26
VCANP13611 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.65■□□□□ 0.26
VCANP13611 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.65■□□□□ 0.26
VCANP13611 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.65■□□□□ 0.26
VCANP13611 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VCANP13611 CYP2A7P1-201ENST00000595391 815 ntBASIC16.65■□□□□ 0.26
VCANP13611 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.65■□□□□ 0.26
VCANP13611 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.65■□□□□ 0.26
VCANP13611 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.65■□□□□ 0.26
VCANP13611 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VCANP13611 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
VCANP13611 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.64■□□□□ 0.26
VCANP13611 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.64■□□□□ 0.26
VCANP13611 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VCANP13611 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VCANP13611 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.64■□□□□ 0.26
VCANP13611 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VCANP13611 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.64■□□□□ 0.25
VCANP13611 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 MIR6069-201ENST00000620069 79 ntBASIC16.64■□□□□ 0.25
VCANP13611 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.64■□□□□ 0.25
VCANP13611 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VCANP13611 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCANP13611 AC012441.1-201ENST00000446669 685 ntBASIC16.64■□□□□ 0.25
VCANP13611 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.64■□□□□ 0.25
VCANP13611 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.64■□□□□ 0.25
VCANP13611 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 AC097065.1-201ENST00000425737 517 ntBASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms